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Steven Wilhelm in ‘The Conversation:’ Viruses aren’t all bad: In the ocean, some help fuel the food web – a new study shows how

January 27, 2026 by Kaitlin Coyle

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Steven Wilhelm in ‘The Conversation:’ Viruses aren’t all bad: In the ocean, some help fuel the food web – a new study shows how

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A research ship sails in the Atlantic Ocean, where scientists are studying the roles of marine viruses. SW Wilhelm
Steven Wilhelm, University of Tennessee and Joshua Weitz, University of Maryland

Virus. The word evokes images of illness and fears of outbreaks. Yet, in the oceans, not all viruses are bad news.

Some play a helpful, even critical, role in sustaining marine life.

In a new study, we and an international team of scientists examined the behavior of marine viruses in a large band of oxygen-rich water just under the surface of the Atlantic Ocean. What we discovered there – and its role in the food web – shows marine viruses in a new light.

Studying something so tiny

Viruses are incredibly small, typically no more than tens of nanometers in diameter, nearly a hundred times smaller than a bacterium and more than a thousand times smaller than the width of a strand of hair.

In fact, viruses are so small that they cannot be seen using conventional microscopes.

Decades ago, scientists thought that marine viruses were neither abundant nor ecologically relevant, despite the clear relevance of viruses to humans, plants and animals.

Then, advances in the use of transmission electron microscopes in the late 1980s changed everything. Scientists were able to examine sea water at a very high magnification and saw tiny, circular objects containing DNA. These were viruses, and there were tens of millions of them per milliliter of water – tens of thousands of times greater than had been estimated in the past.

A theory for how viruses feed the marine world

Most marine viruses infect the cells of microorganisms – the bacteria and algae that serve as the base of the ocean food web and are responsible for about half the oxygen generated on the planet.

By the late 1990s, scientists realized that virus activity was likely shaping how carbon and nutrients cycled through ocean systems. We hypothesized, in what’s known as the viral shunt model, that the marine viruses break open the cells of microorganisms and release their carbon and nutrients into the water.

This process could increase the amount of nutrients reaching marine phytoplankton. Phytoplankton provide food for krill and fish, which in turn feed larger marine life across the oceans. That would mean viruses are essential to a food web that drives a vast global fisheries and aquaculture industry producing nearly 200 million metric tons of seafood.

Watching viruses in action

In the new study in the journal Nature Communications led by biologists Naomi Gilbert and Daniel Muratore, our international team demonstrated the viral shunt in action.

The team took samples from a meters-thick band of oxygen that spreads for hundreds of miles across the subtropical Atlantic Ocean. In this region, part of the Sargasso Sea, single-celled cyanobacteria known as Prochlorococcus dominate marine photosynthesis with nearly 50,000 to upwards of 100,000 cells in every milliliter of seawater. These Prochlorococcus can be infected by viruses.

What are Prochlorococcus? Science Magazine.

By sequencing community RNA – molecules that carry genetic instructions within cells – our team was able to look at what nearly all viruses and their hosts were trying to do at once.

We found that the rate of virus infection in this oxygen-rich band of the ocean is about four times higher than in other parts of the surrounding ocean, where cyanobacteria don’t reproduce as quickly. And we observed viruses causing massive infections in Prochlorococcus.

The viruses were attacking cells and spilling organic matter, which bacteria were taking up and using to fuel new growth. The bacteria respired away the carbon and released nitrogen as ammonium. And this nitrogen appears to have been stimulating photosynthesis and the growth of more Prochlorococcus cells, resulting in greater production that generated the ribbon of oxygen.

The viral infection was having an ecosystem-scale impact.

Scientists aboard a research vessel prepare a large device with many tubes for collecting samples once lowered into the ocean.
Scientists aboard a National Science Foundation research expedition in the open Atlantic in 2019 prepare equipment to collect water samples at different depths to analyze the activity of marine viruses. SW Wilhelm

Understanding the microscopic world matters

Viruses can cause acute, chronic and catastrophic effects on human and animal health. But this new research, made possible by an open-ocean expedition supported by the National Science Foundation, adds to a growing range of studies that demonstrate that viruses are central players in how ecosystems function, including by playing a role in storing carbon in the deep oceans.

We are living on a changing planet. Monitoring and responding to changes in the environment require an understanding of the microbes and mechanisms that drive global processes.

This new study is a reminder of how important it is to explore the microscopic world further – including the life of viruses that shape the fate of microbes and how the Earth system works.The Conversation

Steven Wilhelm, Professor of Microbiology, University of Tennessee and Joshua Weitz, Professor of Biology, University of Maryland

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Filed Under: Featured, News

Graduate Student Sarina Mitchell Wins Smokey’s Choice Award

December 18, 2025 by Kaitlin Coyle

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Graduate Student Sarina Mitchell Wins Smokey’s Choice Award

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Microbiology graduate student Sarina Mitchell attended the Lab Safety Culture Awards Dinner on December 11, 2025 and was awarded the Smokey’s Choice Award for demonstrating excellent safety culture while working in her lab. The award was selected by the voting team of the Lab Safety Culture Awards subcommittee.


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NIH Grant Supports UT Research on Chronic Wounds

November 26, 2025 by Kaitlin Coyle

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NIH Grant Supports UT Research on Chronic Wounds

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Mead’s Quarry Research Reveals Toxic Algae Drivers

November 24, 2025 by Kaitlin Coyle

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Mead’s Quarry Research Reveals Toxic Algae Drivers

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Scholar Spotlight: Zachary Burcham

September 24, 2025 by Kaitlin Coyle

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Scholar Spotlight: Zachary Burcham

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We’re Hiring!

September 17, 2025 by Kaitlin Coyle

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We’re Hiring!

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The Department of Microbiology is actively accepting applications for two tenure-track faculty (Assistant Professor, Fall 2026) in the areas of:

  • Microbial Drivers of Chronic Disease (MCDC)
  • Quantitative Microbe-Plant-Environment Interactions

Please visit the links to view details for each position.

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UT’s Rising Stars of Microbiology

August 28, 2025 by Logan Judy

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UT’s Rising Stars of Microbiology

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The Conversation: ‘Mitochondria can sense bacteria and trigger your immune system to trap them – revealing new ways to treat infections and autoimmunity’

June 30, 2025 by Logan Judy

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The Conversation: ‘Mitochondria can sense bacteria and trigger your immune system to trap them – revealing new ways to treat infections and autoimmunity’

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Neutrophils (yellow) eject a NET (green) to ensnare bacteria (purple).
Neutrophils (yellow) eject a NET (green) to ensnare bacteria (purple). Other cells, such as red blood cells (orange), may also get trapped. CHDENK/Wikimedia Commons, CC BY-SA
Andrew Monteith, University of Tennessee

Mitochondria have primarily been known as the energy-producing components of cells. But scientists are increasingly discovering that these small organelles do much more than just power cells. They are also involved in immune functions such as controlling inflammation, regulating cell death and responding to infections.

Research from my colleagues and I revealed that mitochondria play another key role in your immune response: sensing bacterial activity and helping neutrophils, a type of white blood cell, trap and kill them.

For the past 16 years, my research has focused on understanding the decisions immune cells make during infection and how the breakdown of these decision-making processes cause disease. My lab’s recent findings shed light on why people with autoimmune diseases such as lupus may struggle to fight infections, revealing a potential link between dysfunctional mitochondria and weakened immune defenses.

Side-by-side comparison of labeled illustration of cross-section of mitochondria and its micrograph
Mitochondria do so much more than just produce energy. OpenStax, CC BY-SA

The immune system’s secret weapons

Neutrophils are the most abundant type of immune cell and serve as the immune system’s first responders. One of their key defense mechanisms is releasing neutrophil extracellular traps, or NETs – weblike structures composed of DNA and antimicrobial proteins. These sticky NETs trap and neutralize invading microbes, preventing their spread in the body.

Until recently, scientists believed that NET formation was primarily triggered by cellular stress and damage. However, our study found that mitochondria can detect a specific bacterial byproduct – lactate – and use that signal to initiate NET formation.

Lactate is commonly associated with muscle fatigue in people. But in the context of bacterial infections, it plays a different role. Many bacteria release lactate as part of their own energy production. My team found that once bacteria are engulfed by a compartment of the cell called the phagosome, neutrophils can sense the presence of this lactate.

Inside the phagosome, this lactate communicates to the neutrophil that bacteria are present and that the antibacterial processes are not sufficient to kill these pathogens. When the mitochondria in neutrophil cells detect this lactate, they start signaling for the cell to get rid of the NETs that have entrapped bacteria. Once the bacteria are released outside the cell, other immune cells can kill them.

Here, a neutrophil engulfs MRSA bacteria (green).

When we blocked the mitochondria’s ability to sense lactate, neutrophils failed to produce NETs effectively. This meant bacteria were more likely to escape capture and proliferate, showing how crucial this mechanism is to immune defense. This process highlights an intricate dialogue between the bacteria’s metabolism and the host cell’s energy machinery.

What makes this finding surprising is that the mitochondria within cells are able to detect bacteria trapped in phagosomes, even though the microbes are enclosed in a separate space. Somehow, mitochondrial sensors can pick up cues from within these compartments – an impressive feat of cellular coordination.

Targeting mitochondria to fight infections

Our study is part of a growing field called immunometabolism, which explores how metabolism and immune function are deeply intertwined. Rather than viewing cellular metabolism as strictly a means to generate energy, researchers are now recognizing it as a central driver of immune decisions.

Mitochondria sit at the heart of this interaction. Their ability to sense, respond to and even shape the metabolic environment of a cell gives them a critical role in determining how and when immune responses are deployed.

For example, our findings provide a key reason why patients with a chronic autoimmune disease called systemic lupus erythematosus often suffer from recurrent infections. Mitochondria in the neutrophils of lupus patients fail to sense bacterial lactate properly. As a result, NET production was significantly reduced. This mitochondrial dysfunction could explain why lupus patients are more vulnerable to bacterial infections – even though their immune systems are constantly activated due to the disease.

This observation points to mitochondria’s central role in balancing immune responses. It connects two seemingly unrelated issues: immune overactivity, as seen in lupus, and immune weakness like increased susceptibility to infection. When mitochondria work correctly, they help neutrophils mount an effective, targeted attack on bacteria. But when mitochondria are impaired, this system breaks down.

Microscopy image of long threads extending from round blobs
Neutrophils unable to effectively produce NETs may contribute to the development of lupus. Luz Blanco/National Institute of Arthritis and Musculoskeletal and Skin Diseases via Flickr, CC BY-NC-SA

Our discovery that mitochondria can sense bacterial lactate to trigger NET formation opens up new possibilities for treating infections. For instance, drugs that enhance mitochondrial sensing could boost NET production in people with weakened immune systems. On the flip side, for conditions where NETs contribute to tissue damage – such as in severe COVID-19 or autoimmune diseases – it might be beneficial to limit this response.

Additionally, our study raises the question of whether other immune cells use similar mechanisms to sense microbial metabolites, and whether other bacterial byproducts might serve as immune signals. Understanding these pathways in more detail could lead to new treatments that modulate immune responses more precisely, reducing collateral damage while preserving antimicrobial defenses.

Mitochondria are not just the powerhouses of the cell – they are the immune system’s watchtowers, alert to even the faintest metabolic signals of bacterial invaders. As researchers’ understanding of their roles expands, so too does our appreciation for the complexity – and adaptability – of our cellular defenses.The Conversation

Andrew Monteith, Assistant Professor of Microbiology, University of Tennessee

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Filed Under: Faculty, Featured, News

Alison Buchan named 2024 AAAS Fellow

April 9, 2025 by Logan Judy

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Alison Buchan named 2024 AAAS Fellow

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Monteith Lab Tracks Immune Response

February 27, 2025 by Logan Judy

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Monteith Lab Tracks Immune Response

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Filed Under: Faculty, Featured, News

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Recent Posts

  • Steven Wilhelm in ‘The Conversation:’ Viruses aren’t all bad: In the ocean, some help fuel the food web – a new study shows how
  • Graduate Student Sarina Mitchell Wins Smokey’s Choice Award
  • NIH Grant Supports UT Research on Chronic Wounds
  • Mead’s Quarry Research Reveals Toxic Algae Drivers
  • Scholar Spotlight: Zachary Burcham

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