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$1.86 million NIH Grant Expands Andrew Monteith’s Immunology Research

July 26, 2024 by micro

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$1.86 million NIH Grant Expands Andrew Monteith’s Immunology Research

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A nearly $1.86 million National Institutes of Health grant will allow Andrew Monteith to further study how metabolic processes affect the ways certain white blood cells fight pathogens.

The Maximizing Investigators’ Research Award (MIRA) is the first to Monteith, an assistant professor since January 2023 in the Department of Microbiology with a joint appointment to the Department of Biochemistry and Cellular and Molecular Biology.

Monteith’s work centers on neutrophils, the backbone of the innate immune response to infection. Although they possess an arsenal of antimicrobial processes to combat invading pathogens, neutrophils also cause inflammation, requiring a delicate balance to limit tissue damage while clearing pathogens.

“The goal of this proposal is to decipher how metabolic processes feed into regulating neutrophil function (immunometabolism) and to understand how comorbidities like diabetes, obesity, and autoimmune disease render neutrophils less effective at combating infection,” said Monteith.

His previous work showed mitochondria within neutrophils dictate whether they release neutrophil extracellular traps (NETs) in response to bacteria. NETosis is the release of a meshwork of the neutrophil’s chromosomal DNA studded with antimicrobial proteins to entrap and kill pathogens, he explained. 

Mitochondria are typically seen as the “powerhouse of the cell,” but neutrophils derive nearly all their energy from other metabolic processes. Monteith proposes that mitochondria in neutrophils evolved to detect metabolic changes and dictate how neutrophils should respond during infection. 

His research program will use cutting-edge technologies like chimeric immune cell editing (CHIME) to link the pathways that dictate how the neutrophils decide when to cast NETs and how diseases like diabetes and lupus interfere with these signals, causing aberrant inflammation.

The MIRA funding extends through June 2029. “I hope my research program can evolve into other areas of neutrophil immunometabolism, including understanding how diabetes, obesity, and autoimmune diseases impact neutrophil formation in the bone marrow (hematopoiesis), neutrophil persistence within tissues and at the sites of infection, and other inflammatory processes,” said Monteith.

Staff in the College of Arts and Sciences’ Office of Research and Creative Activity helped Monteith with the application budget and other documents before and after his proposal was scored.

Monteith’s interest in immune cells began in middle school, when his mother was diagnosed with multiple sclerosis, an autoimmune disease.

“As I progressed through my undergraduate, graduate, and postdoctoral training, I was fascinated by how each immune cell played a very specific role and how they worked together to perform a functional immune response,” he said. “Better than 99 percent of the time, the immune response does its job, but occasionally something breaks and disease happens. I was most interested in understanding the mechanisms of these negative outcomes and strategies to swing the battle back in favor of the immune response.”

During NETosis, neutrophils, shown in red, release neutrophil extracellular traps (NETs), in blue, to entrap and kill bacteria such as Staphylococcus aureus, shown in green.  (The image is from Monteith et al, Science Advances, 2021: https://www.science.org/doi/full/10.1126/sciadv.abj2101?rfr_dat=cr_pub++0pubmed&url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org)

Filed Under: Featured, News

Fall 2023: We are Hiring!

September 19, 2023 by micro

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Fall 2023: We are Hiring!

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Multiple Track and Rank Faculty Positions in Microbiology, Immunology, Plant-Microbe Interactions and Microbial Physiology!!

The Department of Microbiology at the University of Tennessee at Knoxville is seeking candidates for three tenure-track and one lecturer/lab coordinator faculty appointments.  Successful candidates are anticipated to start these positions August 1, 2024. UTK is a land-grant university and values engaged forms of research/scholarship/creative activity, teaching and service and considers evidence of these commitments in the records of applicants.

Position 1. We seek candidates at the rank of Associate or Full Professor (9-month, tenure-track) researching plant-associated microbes using molecular, genetic, biochemical, mathematical modeling and/or cell biology approaches. Specific areas of interest include, but are not limited to:

  • Plant-microbe interactions in the context of resilience in agricultural ecosystems and maintaining plant-growth promoting microbes
  • Plant-microbe-mediated resistance and mitigation of pathogens
  • Mechanistic linkage of plant-microbiome composition, function and crop growth from microscopic to regional scales
  • Tritrophic interactions among plants, microorganisms, pollinators, and/or herbivores

Full details available here: http://apply.interfolio.com/131119

Position 2. We seek candidates at the rank of Assistant Professor (9-month, tenure-track) that study host immune responses to microbes using molecular, genetic, biochemical, and/or cell biological approaches. Specific areas of interest include, but are not limited to:

  • Host responses to bacteria, fungi, protozoa (parasites), viruses, and/or helminths
  • Innate or adaptive immune responses to microbes
  • Innovative model systems for host-microbe immune focused interactions, including primary, zoonotic, and opportunistic pathogens or commensal species
  • Immune interactions at mucosal surfaces, including lungs, is of particular interest, but any niche will be considered

Full details available here: http://apply.interfolio.com/130937

Position 3. We seek candidates at the rank of Assistant Professor (9-month, tenure-track) in the area of microbial physiology. Specific areas of interest include, but are not limited to:

  • Experimental models that answer the “how” and “why” of microbial systems
  • The physiology of microorganisms including bacteria, eukaryotes, and archaea
  • The physiological effects of viral infection on microorganisms
  • Interactions of microbes with their microbiomes and environments
  • Lab model systems that resolve mechanistic links between microbes or microbiomes and their environment

Full details available here: http://apply.interfolio.com/130406

Position 4. We seek candidates for a Lecturer and Instructional Laboratory Coordinator (12-month, non-tenure track). The position is renewable yearly, contingent upon evidence of excellence in teaching and performance of programmatic duties. Principal duties involve (i) teaching an introductory microbiology course and (ii) coordinating the administration of multiple microbiology lab courses (from introductory, non-majors to upper-level majors) each semester. Responsibilities include curricular development as well as mentoring and supervision of laboratory graduate student teaching assistants (GTAs). 

Full details available here: http://apply.interfolio.com/131123

The Department of Microbiology values the quality of life of all its members and is committed to supporting the intercultural goals of the University.  Located in the foothills of the Smoky Mountains, The University of Tennessee Knoxville was founded in 1794 and is one of the oldest public universities in the nation. There are over 30,000 students enrolled at the Knoxville campus, who train and study in a city where excellence in academia meets the natural beauty of the southern Appalachian region and in the company of the artists, makers, and entrepreneurs that call Knoxville their home.

Filed Under: Featured, News

Parker Named 2020 Pew Scholar in Biomedical Sciences

August 3, 2023 by micro

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Parker Named 2020 Pew Scholar in Biomedical Sciences

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Benjamin Parker, an assistant professor in the Department of Microbiology, is a member of the 2020 Pew Scholars Program in the Biomedical Sciences. Parker was selected from among 191 nominations submitted by leading US academic and research institutions to receive four years of funding to invest in exploratory research.

The 2020 Pew Scholars are undertaking groundbreaking research projects aimed at advancing human health, from development and aging to better detection, prevention, and defense against cancer.

Parker’s research uses an insect (the pea aphid) and the beneficial and harmful microbes that inhabit it as a model system to study host-microbe interactions, and his lab uses genomic, molecular, and experimental techniques.

“This work will contribute to a broader understanding of how immune systems evolve and how natural selection shapes relationships between animals and beneficial microbes,” said Parker. “It will inform more applied research exploring the effects of microbial communities on human health and disease.”

The Pew Scholars Program in the Biomedical Sciences provides funding to young investigators of outstanding promise in science relevant to the advancement of human health. The program makes grants to selected academic institutions to support the independent research of outstanding individuals who are in their first few years of their appointment at the assistant professor level.

-By Kelly Alley

Filed Under: Featured

Wilhelm Receives John H. Martin Award for Research

August 3, 2023 by micro

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Wilhelm Receives John H. Martin Award for Research

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The Association for the Sciences of Limnology and Oceanography (ASLO) presents the John H. Martin Award to one paper each year that has led to fundamental shifts in research focus and interpretation of a large body of previous observations.

The 2021 John H. Martin Award is for “Viruses and nutrient cycles in the sea,” by Steven Wilhelm (University of Tennessee) and Curtis Suttle (University of British Columbia). The award will be presented at the 2021 ASLO Aquatic Sciences Virtual Meeting in June.

Wilhelm and Suttle’s foundational 1999 paper originated the concept of the ‘viral shunt,’ the phenomenon in which viral infection of marine microbes redirects flow of organic matter away from higher trophic levels and through the microbial loop. Drawing on early estimates of viral production in the water column, Wilhelm and Suttle shined a light on the considerable role viruses play in ocean biogeochemical cycles at a time when much of the research was focused on describing viral diversity and distribution. Their calculations showed that a staggering 25% of all photosynthetically fixed carbon, and associated nutrients, in the ocean may be recycled through the viral shunt.

Additionally, Wilhelm and Suttle made some of the first estimates of the total carbon stored in the viral pool and made eye-opening comparisons to the carbon stored in other types of marine organisms (including whales). Today, the concept of the viral shunt continues to influence our understanding of ocean ecosystem functioning and nutrient cycles. With >1000 citations, and more than 300 in the last five years, the legacy of “Viruses and nutrient cycles in the sea” and the viral shunt concept is still strongly felt in the field today.

“Every so often a novel concept is described which truly transforms a scientific field for decades,” says ASLO President Roxane Maranger. “Wilhelm and Suttle’s conception of the ‘viral shunt’ as a major pathway of oceanic carbon and nutrient flow in their 1999 paper is a stunning example of such a transformation.”

Full Citation: Wilhelm, S.W. and C.A. Suttle. 1999. Viruses and nutrient cycles in the sea, BioScience 49(10): 781-788. doi.org/10.2307/1313569.

ASLO is an international aquatic science society that was founded in 1948. For more than 60 years, it has been the leading professional organization for researchers and educators in the field of aquatic science. The purpose of ASLO is to foster a diverse, international scientific community that creates, integrates and communicates knowledge across the full spectrum of aquatic sciences, advances public awareness and education about aquatic resources and research, and promotes scientific stewardship of aquatic resources for the public interest. Its products and activities are directed toward these ends. With more than 3,800 members worldwide, the society has earned an outstanding reputation and is best known for its journals, interdisciplinary meetings, and special symposia. For more information about ASLO, please visit our website at www.ASLO.org.  

Filed Under: Featured, News

Mind the Gap

May 1, 2023 by micro

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Mind the Gap

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Message from the Department Head
In our Spring 2022 newsletter we are proud to share with you some highlights of the exciting and important research being conducted in the Department of Microbiology here at the University of Tennessee, Knoxville. A distinguishing characteristic of academic scientists is their passion for integrating discovery with education. Scientists stand at the edge of knowledge, pushing outward toward information and ideas that can and do change the world for the better.

Throughout my career I have been inspired by the students with whom I have interacted, who are learning where that edge is, where to push, and how to be comfortable with not knowing all the answers. Often, undergraduate researchers are just beginning to realize that there even is an edge, and as educators we are metaphorically holding up signs that say “mind the gap.” Graduate student researchers know there is a gap, and have decided to commit themselves to exploring what lies within it. This is a brave decision that causes them to diverge from their peers who are starting or continuing their jobs in the ‘real world.’ For many, becoming a graduate student means daily struggles: trying to make the experiments work, trying to explain to friends and family why the results were devastating or exciting, trying to explain to a mentor why the experiment was done that way in the first place, and trying to balance the many obligations that come with being a scientist, student, educator, and a human being.

In my view, one of the greatest privileges of being a faculty member at an institution like ours is watching graduate students grow in their confidence as they realize that they are the world’s expert in the length of the gap they have chosen to study, and as they hone and expand on their ability to communicate old and new scientific ideas to anyone and everyone.

Graduate students are the linchpins of academic research. They are at the frontline of the gap, spending hours at the bench, computer, and field to wrangle large amounts of data and small amounts of liquid into something interpretable for the world. They are at the frontline of our ‘mind the gap’ campaign, helping convey in the classroom and instructional labs the results and importance of scientific discovery to hundreds of undergraduates, most of whom will not share their enthusiasm. They are at the frontline of our self-awareness and image as a department, reminding us of our obligations, both scientific and nonscientific to all members of society; reminding us often of why we are pursuing new knowledge.

Here in the department, as we start the spring semester of 2022, we have just finished interviewing students for the incoming graduate class of fall 2022. The first-year students are entering their second semester and have made the important decision of joining a lab, which will define the general area of the gap they will be exploring. The second-year students are developing and defending their project goals and approaches as they take their preliminary exam or defend their thesis. And the continuing dissertators are running ahead of their mentors, calling back as they transform the unknown into the known.  

As you read through the newsletter and gain a glimpse into the stories of some of our graduate students and faculty, I hope you will share my gratitude and awe for their choice to dedicate themselves to scientific inquiry. This choice, though difficult, makes all the difference to making sure the rest of us have solid ground beneath us. 

Heidi Goodrich-Blair
David and Sandra White Professor and Head of Microbiology

Filed Under: Featured

Jill Walton – Graduate Student Spotlight

April 15, 2023 by micro

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Jill Walton – Graduate Student Spotlight

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Marie Curie once wrote “One never notices what has been done; one can only see what remains to be done.” While speaking with doctoral researcher Jill Walton, it’s clear she is the embodiment of Curie’s words. As she excitedly tells me about her studies, volunteer work, and outreach dreams, I see her vision for a more intentional use of research, academia, and scholarship to benefit not only scientific knowledge, but also humanity. 

Walton studies the roseobacter clade of marine bacteria in Alison Buchan’s lab. Roseobacter has a unique ability to degrade stable benzene rings, making it a promising candidate for the natural removal of polycyclic aromatic hydrocarbons (PAHs), which are anthropogenic pollutants composed of 2 to 6 fused benzene rings. 

Both roseobacter and PAHs — which come from oil spills, industrial discharge, wastewater, and runoff — are largely abundant in coastal environments. This mutual presence, along with roseobacter’s degradation ability, present a promising situation. 

“Roseobacter and the pollutants are there. They show the ability to degrade smaller compounds, so can they degrade more complex, structurally similar compounds?” Walton summarizes. 

Her overarching goal is to create an effective solution for PAH removal in degraded coastal environments. 

“I’m looking at roseobacter’s ability in a lab environment to degrade these pollutants to see if we can harness its ability to bioremediate these areas,” she explains. “If we know how to stimulate them, we can use what is already there instead of adding nonnative solutions.” 

Little is known about the intricacies of roseobacter’s degradation ability; however, these hurdles do not phase Walton. 

“We just need to put all the pieces together and build the story,” she enthusiastically states. 

Walton’s passion for research and solution-oriented mindset extends outside of the lab as well, resulting in an extensive list of extracurricular involvement. She regularly volunteers at the Sustainable Future Center, serves as the Microbiology Department’s Graduate Students Association Outreach and Engagement chair, and lends her voice to the Student Disability Services (SDS) Student Advisory Board. 

But her engagement does not stop here. Walton is a participant in the Community Engagement Academy offered through UT’s Access and Engagement Department where she applies her love for research to outreach initiatives. 

“We have been learning about engaged scholarship,” she explains. “We are focusing on engagement that not only benefits the community, but also our professional interests.” 

Her goal is to utilize her connection with the Sustainable Future Center to implement a community soil and water testing initiative. Walton hopes to provide free testing kits and educational workshops for community members. 

“I don’t want there to be any barriers to participation,” she elaborates. “I am really excited about it! I think it has a lot of potential to be great and an initiative other people will continue when I am no longer here.” 

Walton undoubtedly has a bright future ahead of her. Her passion for scientific discovery and her unrelinquished kindness make her invaluable to both academia and her community.

-By Taylor Mattioli

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Buchan Elected Fellow in the American Academy of Microbiology

April 1, 2023 by micro

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Buchan Elected Fellow in the American Academy of Microbiology

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Alison Buchan, Carolyn W. Fite Professor and associate head of microbiology at the University of Tennessee, Knoxville, was recently elected as a 2022 Fellow in the American Academy of Microbiology. This is an honor that recognizes service, leadership, and creative achievement in the field of  microbiology.  

The fellow selection process is based on several factors, such as scientific and innovative achievements. This year, only 65 professors from across the world received the honor.

“I am humbled and honored to join the ranks of the American Academy of Microbiologists,” Buchan said. ”I am grateful to my many past and current mentors, supporters, and also the many talented and inspiring undergraduate and graduate students that I have had the unique privilege to work with over the years.”

Buchan’s expertise in her discipline has a broad scope. She is a microbial ecologist who studies the interactions bacteria have with one another and more recently she is studying the viruses that infect them. She is also trained as a microbiologist (MSc) and a marine scientist (PhD). The multidisciplinary research Buchan has accomplished at UT has given her the opportunity to collaborate with several other scientists such as chemists, geochemists, and modelers.  

“Science is most definitely a team effort and I am so fortunate to have had the opportunity to work with fabulous students, faculty and research staff here at UT.”

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Faculty Spotlight – Ben Parker and the Parker Lab

March 4, 2023 by micro

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Faculty Spotlight – Ben Parker and the Parker Lab

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Walking into Ben Parker’s lab, you are greeted by rows upon rows of small plants, each in their own enclosed container with a complex handwritten label. What initially looks like a greenhouse operation changes quickly when you look closely at the plants: each is covered by hundreds of tiny bugs, or pea aphids. 

Parker’s lab utilizes the pea aphid as a model organism to study its life history traits and genetics and uses the findings to further understand larger questions in biology, evolutionary biology, and microbiology. The pea aphid system offers two main advantages: the insects give live birth to genetically identical offspring in just 10 days, and their bodies contain a simple microbial community, allowing Parker and his researchers to easily add or remove microbes in the systems and complete various mechanistic studies. 

Bacteria are one microbe that inhabit aphids. They are vertically transmitted, which means they are passed from parents to offspring, and can form important symbiotic relationships with their hosts. 

“The bacteria Regiella insectcola makes aphids resistant to the fungal pathogen Pandora neoaphidis,” Parker elaborates. “Not all aphids harbor Regiella, but those that do are more resistant to fungal infections.” 

However, the bacteria are not entirely beneficial. 

“One big question we are interested in is how the aphid’s immune system evolves to accommodate these beneficial bacteria in ways that still allow it to fight off bacterial pathogens,” Parker says. 

For example, the lab has been focusing on the phenoloxidase mechanism, which is an enzyme aphids use in melanization (a method insects use to fight pathogenic microbes). Aphids harboring Regiella have reduced gene expression of the phenoloxidase enzyme producing genes. 

The lab theorizes that this occurs because the bacteria are attempting to maximize their abundance, despite compromising the aphid’s ability to fight off other bacteria, but this finding is just a first glimpse into the mechanism. 

“We want to understand that in a broader context,” Parker states. “We want to know what effects that has on interactions with pathogenic bacteria and how those mechanisms are evolving in natural populations.” 

Viral genes are also vertically transmitted between aphid parents and their offspring. One such gene has interesting morphological effects on the host wherein in two genetically identical offspring, one can be winged while the other is wingless.  

This occurrence is an example of a phenotypically plastic traits, or a morphological trait influenced by the environment. In this case, the environmental trait influencing gene expression is plant crowdedness, which aphids have evolved to sense. The viral gene triggers the production of winged offspring by making aphids more sensitive to crowding.

 “When it is too crowded, they produce winged offspring, so they can fly to another plant and start over,” Parker explains. 

Currently, the Parker lab is focusing their studies on the genome and microbiome of the Pandora neoaphidis fungal pathogen. Additionally, they are working to understand aphid immune systems and how different aphid genotypes interact with bacteria. This talented group undoubtedly has a promising future.

-By Taylor Mattioli

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Mikucki Awarded for Excellence in Teaching

March 1, 2023 by micro

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Mikucki Awarded for Excellence in Teaching

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Faculty in the College of Arts and Sciences were honored for their research, teaching, creative activities, outreach, and leadership in diversity at the college awards banquet Tuesday, February 28, 2023. Theresa Lee, Herbert Family Dean of the College of Arts and Sciences, and members of her cabinet hosted the annual event at the UT Conference Center.

Jill Mikucki, associate professor of microbiology, received the junior-level Excellence in Teaching award. Mikucki is a one of a few leading Antarctic microbiologists in the world and has been a lynchpin member of the interdisciplinary team exploring this difficult-to-access environment. She brings this remote region to the UT campus through her thoughtful and creative research laboratory and classroom instruction. 

She helps students learn microbiology through the lens of exploration and discovery, engaging them in independent learning, and piquing their curiosity about real-world issues. She gives students insights into life on Earth and other planets through the development of novel and effective curriculum that promotes learning through storytelling. 

In the past several years, she created a graduate level topics course on microbial justice that focuses on the intersection of microbiological research and environmental, social and racial justice, and an undergraduate course on astrobiology that, according to one student, is the “coolest, most thought-provoking course … at UT.”

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Elkins (‘95, ‘01) Receives Professional Achievement Award

March 1, 2023 by micro

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Elkins (‘95, ‘01) Receives Professional Achievement Award

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Christopher Elkins (‘95, ‘01) received the Professional Achievement Award, which recognizes alumni who have achieved a high degree of success in their chosen field, a record of notable accomplishments, and a history of outstanding contributions to their discipline and/or creative pursuits. 

Elkins, who received his master’s and PhD in microbiology, is an internationally recognized expert in antibiotic resistance and microbial pathogen detection. He is regularly sought as an expert speaker for national and international scientific conferences and has played instrumental roles as an agency representative for both the FDA and CDC. Elkins has authored, or co‐ authored, more than 65 peer-reviewed scientific publications and five books or book chapters. He has also held leadership roles for the American Society for Microbiology, and served as an editor or on the editorial board of four different scientific journals.

Elkins has made significant contributions to research aimed at identifying and combating microbial pathogens, including SARS‐CoV‐2 (aka COVID‐19). He has successfully led the development and coordination of scientific research and pathogen surveillance programs. In addition to his professional accomplishments, Elkins volunteers his time and talent as an advisory board member to the Department of Microbiology.

“I found that simply taking advantage of every opportunity that was ever afforded to me has never steered me wrong,” Elkins said. “And it aligns with the Volunteer spirit that provides the pedestal that puts me with what I credited as seemingly being at the right place at the right time.”

Filed Under: Newsletter

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Department of Microbiology

College of Arts and Sciences

1311 Cumberland Avenue
307 Ken and Blaire Mossman Bldg.
Knoxville TN 37996-1937

Email: microbiology@utk.edu

Phone: 865-974-3441

The University of Tennessee, Knoxville
Knoxville, Tennessee 37996
865-974-1000

The flagship campus of the University of Tennessee System and partner in the Tennessee Transfer Pathway.

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